PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030631
Common NameLOC102600604
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 331aa    MW: 36732.3 Da    PI: 6.5091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030631genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14114165155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  PGSC0003DMP400030631 114 QRMTHIAVERNRRKQMNEHLSVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 165
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.87E-13112169No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13112167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-17112183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.389113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-10119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MALEALSTNE LLNFIIYDTI STTTNNNNNN LDENALFFDN HEENNAFLLK PQDFCTTTPL  60
EQQYSTAASV PRQDTCREKN NLSVAAQSGG GGGGRKKRRR RPKICKNKEE AENQRMTHIA  120
VERNRRKQMN EHLSVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHILQS LEAQKFVLLQ  180
QQGGTTSNTG DGCDGYDVGK TEVSSAEYVG TPFAQFFSYP QYTCCELPNK YTSKSKAAIA  240
DIEVTLIETH ANVRILSRRR FRQLSKLVAA FQSLYISVLH LNVTTLDPLV LYSISAKVEE  300
GCQLNSADDI AGAVHHMLRI IEGEAATLSC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100RKKRRRR
295100KKRRRR
3114125RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030631
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2612330.0GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352865.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR05e-77BH071_ARATH; Transcription factor bHLH71
TrEMBLM1BHA50.0M1BHA5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000452100.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.18e-79beta HLH protein 71
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]