PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400030610 | ||||||||
Common Name | LOC102601403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 28224.1 Da PI: 4.542 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 15 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l d++++ G +W++Ia++++ gRt++++k+ w+++l PGSC0003DMP400030610 15 KGPWTSEEDEKLMDYITKNGHTnwqlipkkaglnRWSKIASHLP-GRTDNEIKNLWNTHL 73 79******************99**********************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.583 | 10 | 77 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-12 | 13 | 45 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 14 | 75 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.29E-15 | 15 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-14 | 15 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.45E-13 | 17 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-14 | 46 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRYPCCKVD EDLKKGPWTS EEDEKLMDYI TKNGHTNWQL IPKKAGLNRW SKIASHLPGR 60 TDNEIKNLWN THLKKKLLKS GIDPVTHQPI TDPNLLLSLS NLMNPFESAL RLQAELTEIA 120 KIHIIQNIIQ VLNTPPPTLI PSLQENNYPM QQCYNNIIAP YDQILTNEPS PISNNLSDNM 180 VVNSSILENN MINIVDNNSE YSSLPSLVPV TPENSVPFDQ QIIDMINPSY YDDFYALEKI 240 LDDEANII* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400030610 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166577.1 | 1e-180 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 6e-36 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | M1BH84 | 1e-179 | M1BH84_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045183 | 1e-180 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-40 | myb domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400030610 |
Entrez Gene | 102601403 |
Publications ? help Back to Top | |||
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