PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030609
Common NameLOC102603528
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 324aa    MW: 36629.9 Da    PI: 6.8798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030609genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-181562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEde+l d + + G  +W +I+++ g++R++k+c++rw +yl
  PGSC0003DMP400030609 15 KGPWTSEEDEKLMDFISKNGHTNWQLIPKKAGLNRCGKSCRLRWTNYL 62
                          79********************************************97 PP
2Myb_DNA-binding52.11.5e-1668113148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg ++ eE+e++++++ +lG++ W++Ia++++ gRt++++k++++++l
  PGSC0003DMP400030609  68 RGEFSIEEEEIIINLHSLLGNK-WSRIAAHLP-GRTDNEIKNFYNTHL 113
                           899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.6321066IPR017930Myb domain
SuperFamilySSF466892.51E-3012109IPR009057Homeodomain-like
SMARTSM007178.9E-151464IPR001005SANT/Myb domain
PfamPF002491.8E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-241669IPR009057Homeodomain-like
CDDcd001679.39E-121762No hitNo description
SMARTSM007173.7E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129420.71267117IPR017930Myb domain
PfamPF002497.4E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2670117IPR009057Homeodomain-like
CDDcd001671.56E-781113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRYPCCKVD EDLKKGPWTS EEDEKLMDFI SKNGHTNWQL IPKKAGLNRC GKSCRLRWTN  60
YLRPDIKRGE FSIEEEEIII NLHSLLGNKW SRIAAHLPGR TDNEIKNFYN THLRKKLLRL  120
GIDPRTHKPI SDLNLLINLS HQFTSKHNIN HHLMNNNNPL AYALKLQAQV TEIAKIQQLV  180
HSLFTPININ NPLSTNFHEN FATSSSHVIT NNVATNTQFL NSLLVNSCGN IPNLDNSTSC  240
ISNSSELSNY QSELNSKVDN FEGLSNNSSK TQVDYNNSLP SLIAPSSPDQ ANDAHVNQDY  300
DPNTLSQLNH EGIDDSFWND IFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121174108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030609
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352874.10.0PREDICTED: transcription factor MYB32-like
TrEMBLM1BH830.0M1BH83_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000451820.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-69myb domain protein 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]