PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400030577 | ||||||||
Common Name | LOC102593263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LSD | ||||||||
Protein Properties | Length: 147aa MW: 15237.8 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.3 | 1.3e-13 | 29 | 53 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V PGSC0003DMP400030577 29 CSGCRNLLLYPVGATSVCCAVCNAV 53 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.9e-15 | 68 | 92 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV PGSC0003DMP400030577 68 CGGCHTLLMYIRGATSVQCSCCHTV 92 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.7e-13 | 106 | 130 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V PGSC0003DMP400030577 106 CGNCRMLLMYQYGARSVKCAVCNFV 130 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 3.8E-4 | 24 | 127 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.0E-12 | 26 | 56 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-10 | 29 | 53 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 3.35E-5 | 29 | 127 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 8.8E-15 | 65 | 94 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-12 | 68 | 92 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.0E-12 | 103 | 133 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.0E-12 | 106 | 130 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MPVPLAPYPT PPTPFTPPAN AGTQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG 60 TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLAMEANQ VAHVNCGNCR MLLMYQYGAR 120 SVKCAVCNFV TSVGVSTSTA EQKFNS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400030577 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010787 | 4e-59 | AP010787.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0012J05, complete sequence. | |||
GenBank | HG975447 | 4e-59 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 4e-59 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352843.1 | 1e-101 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_006352844.1 | 1e-101 | PREDICTED: protein LOL1 isoform X1 | ||||
Refseq | XP_006352845.1 | 1e-101 | PREDICTED: protein LOL1 isoform X1 | ||||
Swissprot | Q93ZB1 | 2e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | M1BH56 | 1e-100 | M1BH56_SOLTU; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 5e-93 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 9e-68 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400030577 |
Entrez Gene | 102593263 |
Publications ? help Back to Top | |||
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