PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400030569 | ||||||||
Common Name | LOC102591685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37394.7 Da PI: 5.4445 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 5e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelv +yLk+k++g ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF+ rdkky++g+r+nratksgyWkatg PGSC0003DMP400030569 6 LPPGFRFHPTDEELVGYYLKRKTDGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDFEWFFFCARDKKYPNGSRTNRATKSGYWKATG 93 79****************************.99***************5333344566******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd++v++ + ++vg +ktLvfy+grap g +tdWvmheyrl PGSC0003DMP400030569 94 KDRKVVC-HPAVVGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133 *******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-61 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.514 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAGTSLPPGF RFHPTDEELV GYYLKRKTDG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR 60 DFEWFFFCAR DKKYPNGSRT NRATKSGYWK ATGKDRKVVC HPAVVGYRKT LVFYRGRAPL 120 GDRTDWVMHE YRLCDDVTQG TPSFQGPFAL CRVIKRNDVS LKTKDVGGVK QIGCTTSGAF 180 TSVNALSDET PTQSAYMSND SNYSTPITSP YQTTQFGDYE SAIGANSANL WMSSAMILDS 240 SKECPQGQNA SNYCPQYDFP SMTPCQPSDQ SEFTSNSTFP NFRGEVELSG DLSSFGCMSP 300 YSIHGSYVGF YGNEDMTYEG FNQNNSTKNP NLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-51 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}. | |||||
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400030569 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}. | |||||
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352840.1 | 0.0 | PREDICTED: NAC domain-containing protein 45-like | ||||
Swissprot | O49697 | 7e-96 | NAC71_ARATH; NAC domain-containing protein 71 | ||||
Swissprot | Q9LS24 | 9e-96 | NAC96_ARATH; NAC domain-containing protein 96 | ||||
TrEMBL | M1BH48 | 0.0 | M1BH48_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400045129 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6256 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 3e-98 | NAC domain containing protein 71 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400030569 |
Entrez Gene | 102591685 |
Publications ? help Back to Top | |||
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