PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030542
Common NameLOC102594615
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 238aa    MW: 27130.5 Da    PI: 9.531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030542genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.7e-12107148351
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                            +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  PGSC0003DMP400030542 107 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 148
                           79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.54489161IPR001471AP2/ERF domain
PfamPF008472.1E-6106149IPR001471AP2/ERF domain
SMARTSM003807.6E-5106163IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-8107151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.1E-7109153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVSIRRRKLL GLCSGRSAFL VPLPKFSGNG HFAEHRFFNN RPTSVHPMPS TDIDESKEKI  60
AIKVVPGSSN SHASGSLMEQ TAQQFPEVKR RKRHRRKHFE NQEPCLMRGV YFKNMKWQAA  120
IKVDKKQIHL GTVGTQEEAA RLYDRAAFMC GREPNFELSE EEKQELRQFK WDDFLAFTRS  180
AITNKKTRRR SGAGARRKSE PLTSALNSEE DEEEEGGEPE SNSFSASEDI DHDILFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030542
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2540661e-91AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence.
GenBankHG9754481e-91HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-91HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340012.11e-177PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_006340013.11e-177PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLM1BH291e-176M1BH29_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000450911e-177(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-46ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]