PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030540
Common NameLOC102594276
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 395aa    MW: 45539.3 Da    PI: 4.4285
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030540genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.5e-35141062103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k ye++ede+++ lisw+++++sf+++d  +f++++LpkyFkhsnf+SF+RQLn+YgF+k+++++         weF ++sF kg+
  PGSC0003DMP400030540  14 FLLKCYEMVEDESTDGLISWNQSEKSFIIWDVPKFSSELLPKYFKHSNFSSFIRQLNIYGFHKTDTDR---------WEFLNDSFVKGQ 93 
                           9***************************************************************9999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ l++i r+k++
  PGSC0003DMP400030540  94 KHFLKNIVRRKQS 106
                           *********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.03E-3310103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.0E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-2914103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVKSFENGVS VAPFLLKCYE MVEDESTDGL ISWNQSEKSF IIWDVPKFSS ELLPKYFKHS  60
NFSSFIRQLN IYGFHKTDTD RWEFLNDSFV KGQKHFLKNI VRRKQSSVAQ KKPSQLEEIK  120
SCTSEESKNL ELWKEVENLK DERNVLTQEL VKLKEHQQNS ESKLILLREQ LKVREKNQQQ  180
MLSFIVMAMQ SPSFLVQFFQ PKENSWCMSE NGNNILSEVE DDCVDTPSDR AIVRYHPPTH  240
EEAAEPPLCA EPEPALDSQK PMELDFSSNE LKDMFSNIDF FSGLMDEKLL AFENRVPLTL  300
PYYPDDENLL EQLLLSSPIT ENKEGEVIDN QACSHAVMET DLSFQPIESG TFSGSEEPFH  360
SLEDKKMEMA LLETQSDNLS NMDILTEQLG HSKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-221010325129Heat shock factor protein 1
5d5v_B8e-221010325129Heat shock factor protein 1
5d5v_D8e-221010325129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142300.0BT014230.1 Lycopersicon esculentum clone 133429F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340011.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLM1BH270.0M1BH27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000450890.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122352222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-76heat shock transcription factor A8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]