PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030431
Common NameLOC102580320
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 412aa    MW: 45673.9 Da    PI: 5.3296
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030431genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41e-06444539
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                          +C+ ++e++ + +C++++ +lC +C  ++H+       H++
  PGSC0003DMP400030431  4 ICEYCGEQRSIVYCRSDSACLCLSCDRNIHSAnalsqrHSR 44
                          7*****************************65677777765 PP
2zf-B_box231.7e-074687439
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           +C++++++++++ C + ++ lC++C    H +      H++
  PGSC0003DMP400030431 46 LVCERCNSQPAIFRCVEERVSLCQNCDWMAHASsstcltHKR 87
                          68************************9999976777777776 PP
3CCT58.91.8e-20354396143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           R  a+lRYkeK+k+R+F+K++rY sRK++Ae R+RvKGrFvk 
  PGSC0003DMP400030431 354 RSDAVLRYKEKKKKRQFDKRVRYVSRKTRAEVRKRVKGRFVKD 396
                           889**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
SMARTSM003365.0E-8447IPR000315B-box-type zinc finger
CDDcd000214.06E-7447No hitNo description
PROSITE profilePS501199.0724390IPR000315B-box-type zinc finger
CDDcd000210.001064777No hitNo description
SMARTSM003360.484890IPR000315B-box-type zinc finger
PROSITE profilePS5101714.813354396IPR010402CCT domain
PfamPF062033.6E-15354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MGYICEYCGE QRSIVYCRSD SACLCLSCDR NIHSANALSQ RHSRTLVCER CNSQPAIFRC  60
VEERVSLCQN CDWMAHASSS TCLTHKRQAL SCYTGCPSAV ELSTIWSFLL GDPSIRDLTC  120
EQGMGSMSIT DCQPGDSQHP QVKEKSQDMS SALDEANDLH NLVKSAPFMG SSMPSLDNEL  180
HNVELLVGST NLTWSKVRNS GTKGYDDPFS DDFNMDEVDL SIENYEELFG VSIDNRDRLF  240
KNEDIDDFFG TKDMSTAESS FQGVNAVEGS AVGKVNTVKS ACSNAASAES MMSCKTEPPT  300
LCFAMQQSSF SFSNLTGESN AGDNQDCGAS SMLSMGEPSW RPPCPESSMP STSRSDAVLR  360
YKEKKKKRQF DKRVRYVSRK TRAEVRKRVK GRFVKDGDAY DYDPLHQTRS Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030431
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357679.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1
RefseqXP_006357681.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1
RefseqXP_015169010.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10 isoform X1
SwissprotQ9LUA91e-122COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLM1BGT70.0M1BGT7_SOLTU; B-box zinc finger protein 7
STRINGPGSC0003DMT4000448780.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-110B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]