PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030290
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 413aa    MW: 47018.1 Da    PI: 5.2221
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030290genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.4e-34161062101
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+ye+++d  ++ ++sw++ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+         weF++++F +g+
  PGSC0003DMP400030290  16 FLLKTYELVDDTYTNPVVSWNHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEFLRGQ 95 
                           9***************************************************************9998.........************ PP

                           XXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkk 101
                           ++ll++i r+k
  PGSC0003DMP400030290  96 RHLLKNIYRRK 106
                           *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-387100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-3411105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-5812105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDNCNERSSS SSPAPFLLKT YELVDDTYTN PVVSWNHNGR SFVVWNPPEF ARDLLPKYFK  60
HNNFSSFIRQ LNTYGFRKVD PEQWEFANEE FLRGQRHLLK NIYRRKPIHS HSATGQSVAA  120
LTDSERQEYE DEIERLKREN SMLQSSAENQ EKFNMEYESG IKSMEQRLQN VAHRQGKLIS  180
LLAQLLQRPG FSSDFIQCAN NNSKKRRLLV SNYLTEEENA ATNSVVAPKL DMEMVKKLDS  240
SINFWERFLY GTRMNPTEDQ TCDFDHTQPL PSPIVIREMD TSSDDSGKRN SPIDHSPSSS  300
ELGGGPLSPV ISSIYVNLEC QLKPSDQVNQ VEGKTTKTSE LVSNSGNDVF WQQFLTETPG  360
CTEPQEVENK GINELACDIR LGDNHRYWWN SGVNVENLAE RMGHLSSPAT GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221010524129Heat shock factor protein 1
5d5v_B2e-221010524129Heat shock factor protein 1
5d5v_D2e-221010524129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030290
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-147HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348918.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLM1BGI10.0M1BGI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000446830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.15e-80HSF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]