PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400030113
Common NameLOC102593271
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 140aa    MW: 15465.9 Da    PI: 6.5373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400030113genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-202273256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkklege 56
                          +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa+a+++a+ +++g+
  PGSC0003DMP400030113 22 KYRGVRRRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAARAYDRAAYSMRGH 73
                          8********.**********....33334**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.82E-182281No hitNo description
SuperFamilySSF541711.9E-232281IPR016177DNA-binding domain
PfamPF008471.8E-152273IPR001471AP2/ERF domain
PROSITE profilePS5103223.7492280IPR001471AP2/ERF domain
SMARTSM003801.1E-332286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-312282IPR001471AP2/ERF domain
PRINTSPR003679.3E-122334IPR001471AP2/ERF domain
PRINTSPR003679.3E-124662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MEQDPSNGRR TNGGGGGGGE IKYRGVRRRP WGKFAAEIRD SARQGARVWL GTFNTAEEAA  60
RAYDRAAYSM RGHLAILNFP EEYNLPTSSS HFYSAGSYSS PSMASSSSSS SRQVLEFEYL  120
DDKLLEELLD CDEEPNKRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-40121393129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400030113
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-165HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354501.16e-99PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM1BG411e-97M1BG41_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000443832e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.18e-26ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]