PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029795
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 283aa    MW: 31689.7 Da    PI: 9.2915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029795genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-202777256
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          ++ GVr+++ +grWvAeI+d s   +r r +lg+++taeeAa a+++a+++l+ge
  PGSC0003DMP400029795 27 KFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTAEEAAHAYDEAARALRGE 77
                          799******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.57E-312784No hitNo description
PROSITE profilePS5103220.3762784IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-202784IPR016177DNA-binding domain
SMARTSM003805.2E-362790IPR001471AP2/ERF domain
PfamPF008479.4E-152777IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-292785IPR001471AP2/ERF domain
PRINTSPR003672.9E-72839IPR001471AP2/ERF domain
PRINTSPR003672.9E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKTTITTNTN TTKSSSTQPK KSSITRKFVG VRQRPSGRWV AEIKDSSQRV RLWLGTYDTA  60
EEAAHAYDEA ARALRGENAR TNFASTAPNS DMDQSHSSHD TKHGLSFSSI KEKLSKNLQS  120
IMARNSENKS SSSSKSITRV SDHFTFARIF HFKNNYDQQY QNHHRHVDMN KVVQPSIRVL  180
PQDVTDNNNN NDLCWENSSS VSDCSSEWAA FRQLGLDSDN YGSDGSDQYF VGSDPLMAGW  240
ISSPDIMSNS TNEGSSRSKR FKVSSSVMVP PTFSEKIMYH FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1427831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029795
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339774.10.0PREDICTED: ethylene-responsive transcription factor ERF010-like
TrEMBLM1BFD00.0M1BFD0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000439300.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125641721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-20related to AP2 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]