PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400029415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 15243.5 Da PI: 9.1663 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.9 | 6.4e-14 | 6 | 54 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++ k+n+ ++ R++ i K L +LCd++v+ +i s++g+l++++ PGSC0003DMP400029415 6 QSKKKTNNPKSYQERKECIKRKSMKLATLCDIKVCTVITSPNGELQTWP 54 57899*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.713 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-10 | 8 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-14 | 8 | 80 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MEEENQSKKK TNNPKSYQER KECIKRKSMK LATLCDIKVC TVITSPNGEL QTWPDNLDAY 60 NEVLDLYSQN LKPEKKHKES STPVPQLEEE QGEKDLLTLV ESKLAVVNRR IRFLENKNVV 120 VVDKGKRKRI E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400029415 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361194.1 | 5e-78 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
TrEMBL | M1BEI1 | 2e-89 | M1BEI1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400043366 | 4e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39810.1 | 6e-10 | AGAMOUS-like 98 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400029415 |
Publications ? help Back to Top | |||
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