PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400029412 | ||||||||
Common Name | LOC102595092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 14982.2 Da PI: 7.9173 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.8 | 5.1e-12 | 7 | 54 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ k+n+ + R++ i K EL LCd++v+ +i +++g+l++++ PGSC0003DMP400029412 7 SKKKTNNPKPYQGRKECIKRKSMELENLCDIKVCTVITGPNGELQTWP 54 7889999999*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.802 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-13 | 8 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-8 | 17 | 53 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MAEEDQSKKK TNNPKPYQGR KECIKRKSME LENLCDIKVC TVITGPNGEL QTWPDNLDAC 60 KEVLDLYSQN LKPEKKHKES STPVPEKEEE QGEKDLLTLV ESKLAAINRS ILFLENKNVV 120 VADKGKRKRI E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400029412 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365204.1 | 9e-91 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
TrEMBL | M1BEH9 | 2e-89 | M1BEH9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400043360 | 3e-90 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39810.1 | 9e-10 | AGAMOUS-like 98 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400029412 |
Entrez Gene | 102595092 |
Publications ? help Back to Top | |||
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