PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029373
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 265aa    MW: 29446.8 Da    PI: 6.5541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029373genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17.1e-2196145255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+G+r+++ +g+W+AeIrdp     +  r++lg+f tae+Aa+a+++a+k+++g
  PGSC0003DMP400029373  96 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEDAARAYDEAAKRIRG 145
                           8********.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2396154IPR016177DNA-binding domain
PROSITE profilePS5103224.2596153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3396153IPR001471AP2/ERF domain
SMARTSM003808.5E-4196159IPR001471AP2/ERF domain
CDDcd000181.39E-3496154No hitNo description
PfamPF008473.9E-1496145IPR001471AP2/ERF domain
PRINTSPR003671.2E-1197108IPR001471AP2/ERF domain
PRINTSPR003671.2E-11119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MCGGAIISDY EPAGNFYRKL SARDLWAEFD PISDYWSSSS SPSTVGKPYS AQSPVTHSVD  60
KPKKSDSGKS NQLKKGNKTV KVEKEKSSGP RLRKNKYRGI RQRPWGKWAA EIRDPQKGVR  120
VWLGTFNTAE DAARAYDEAA KRIRGDKAKL NFPVPSPPAK RQCTSTVAAD PPPALLLESS  180
NIISDNNSPL MNFGYDVQSQ TPYYPMEMPV ASDDYELKEQ ISNLESFLEL EPADSSDQFS  240
GIVDSDPLNV FLMEDFASTQ HQFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2497154361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029373
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0858200.0AB085820.1 Solanum tuberosum cip353 mRNA for AP2/ERF-domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305557.10.0ethylene-responsive transcription factor RAP2-3
TrEMBLM1BEF00.0M1BEF0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000433110.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-44ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]