PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400029299

Common Name

LOC102583062

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 399aa MW: 44889.8 Da PI: 8.9887

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400029299	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	208	261	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ PGSC0003DMP400029299 208 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 261 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.63E-15	204	261	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	206	261	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-24	208	261	IPR006447	Myb domain, plants
Pfam	PF00249	5.7E-7	209	260	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNNK SSSTTTTWKT TSSNNNNTDR DEMNLFFLRR ALESKPDNNN 60 TLFGLSLSNP NYKPSHTQLI NSSHFHPLQN NNFIHQQNQQ QQLSFLRPIR GIPLYHQNPL 120 PLSHHHNNYP IFAHQTFENT TTTTATATTP TLPIHSSGYC ITSFNNNSNK TIPNSSPTTI 180 PFHHSNHQGG LMRSRFLSRF PKRTMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE 240 LMDVKDLTLA HVKSHLQMYR TVKTTDRAAV PASSGQSEVF DNGSSGETSE DLMPDMENSR 300 KSDLSDQQGK NSMHLQEIDY HGLWSNSSSR ESWQLHGKHG DYPGNIPSLE KTVKNQHIDL 360 EAKCLSYDRL SGEVSSSSIT ETSPKKPNLE FTLGRPSE*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNNK SSSTTTTWKT TSSNNNNTDR DEMNLFFLRR ALESKPDNNN  60
TLFGLSLSNP NYKPSHTQLI NSSHFHPLQN NNFIHQQNQQ QQLSFLRPIR GIPLYHQNPL  120
PLSHHHNNYP IFAHQTFENT TTTTATATTP TLPIHSSGYC ITSFNNNSNK TIPNSSPTTI  180
PFHHSNHQGG LMRSRFLSRF PKRTMRAPRM RWTSSLHARF VHAVELLGGH ERATPKSVLE  240
LMDVKDLTLA HVKSHLQMYR TVKTTDRAAV PASSGQSEVF DNGSSGETSE DLMPDMENSR  300
KSDLSDQQGK NSMHLQEIDY HGLWSNSSSR ESWQLHGKHG DYPGNIPSLE KTVKNQHIDL  360
EAKCLSYDRL SGEVSSSSIT ETSPKKPNLE FTLGRPSE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	209	263	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400029299

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006365971.1	0.0	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	5e-63	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M1BE88	0.0	M1BE88_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400043200	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	8e-65	G2-like family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400029299
Entrez Gene	102583062

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]