PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029225
Common NamePOTH15
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 344aa    MW: 38698.7 Da    PI: 5.8406
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029225genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-092733052355
                           SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +yps++++  LA+++gL+++q+ +WF N+R ++
  PGSC0003DMP400029225 273 PYPSESQKLALAESTGLDQKQINNWFINQRKRH 305
                           8*****************************885 PP
2ELK41.23.4e-14225246122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK qLlrKYsgyLgsLkqEF+
  PGSC0003DMP400029225 225 ELKGQLLRKYSGYLGSLKQEFM 246
                           9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.7E-2084128IPR005540KNOX1
PfamPF037901.9E-2286125IPR005540KNOX1
SMARTSM012565.8E-26135186IPR005541KNOX2
PfamPF037912.5E-21139185IPR005541KNOX2
SMARTSM011882.8E-8225246IPR005539ELK domain
PROSITE profilePS5121311.174225245IPR005539ELK domain
PfamPF037895.6E-11225246IPR005539ELK domain
PROSITE profilePS5007112.827245308IPR001356Homeobox domain
SMARTSM003891.3E-11247312IPR001356Homeobox domain
SuperFamilySSF466891.37E-19247322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27250310IPR009057Homeodomain-like
CDDcd000863.28E-12257309No hitNo description
PfamPF059201.4E-17265304IPR008422Homeobox KN domain
PROSITE patternPS000270283306IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEGGNTNTSC LMMMGYGDHE NNNNGNGNAS LCAPQMMMMM PPPPPSLTNN NNAETSNNNN  60
ILFLPFMDTN NNNPQEDNNS SSSSSIKSKI MAHPHYPRLL AAYLSCQKIG APPEVVARLE  120
EICATSATMG RNSSSGGIIG EDPALDQFME AYCEMLTKYE QELSKPFKEA MVFLSRIECQ  180
FKALTLAPNS SHESALGEAM DRNGSSDEEV DVNNSFIDPQ AEDRELKGQL LRKYSGYLGS  240
LKQEFMKKRK KGKLPKEARQ QLVDWWLRHI KWPYPSESQK LALAESTGLD QKQINNWFIN  300
QRKRHWKPSE DMQFVVMDAA HPHYYMDNVL ANHFPMDMTP SLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240249LKQEFMKKRK
2246250KKRKK
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Function -- GeneRIF ? help Back to Top
  1. regulation, overexpression, and role in controlling diverse developmental processes
    [PMID: 27217546]
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776870.0KJ477687.1 Solanum tuberosum class I knox protein (POTH15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001278851.10.0homeobox protein knotted-1-like LET6-like
SwissprotO222990.0LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLM1BE180.0M1BE18_SOLTU; Class I knox protein
STRINGPGSC0003DMT4000430830.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-131KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Mahajan AS, et al.
    Regulation, overexpression, and target gene identification of Potato Homeobox 15 (POTH15) - a class-I KNOX gene in potato.
    J. Exp. Bot., 2016. 67(14): p. 4255-72
    [PMID:27217546]