PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400029024
Common NameLOC102599641
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 440aa    MW: 49242.6 Da    PI: 6.4157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400029024genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09252299455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PGSC0003DMP400029024 252 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 299
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.28E-10246303No hitNo description
SuperFamilySSF474592.22E-17246318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17248316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.682248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6252299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEKGNLFIND DNTTYEHLQN CFFNPNLDNN NSDPFESALS SMVSSPISIP NNNSGGDNFV  60
LRELIGRLGS ICNNNNNNSS STNNSCYTTP LNSPPKLNLS MRGNLPPTQF TTDPGFAERA  120
ARFSCFATNL ESGQLSSNHS IKIQDFKDVN LVQRNSEFGD SRENSSLSEQ IIGQNDTNSR  180
KRKSISKGKS SKIVNEKNES NAKRSKSEEN ENKVTKEEEK AVLEENKDNQ KATEPPKDYI  240
HVRARRGQAT DAHSLAERVR REKISERMKL LQDLVPGCNK VTGKAVMLDE IINYVQSLQR  300
QVEFLSMKLA TVNPRMDFNM EALLSKDMFQ SRGSLAHNMY QSETSTQGFP YGFQSQPNQN  360
YHKGTEFPFP INSLNPNLIR NSSMQLPPLD GFVEPTPQVP TFFEDDLNSV VQMGFGQNQN  420
QSFHSVAGNV PNSQMKVEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400029024
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358792.10.0PREDICTED: transcription factor bHLH62
TrEMBLM1BDN10.0M1BDN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000427910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-89bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]