PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 206aa MW: 23058.8 Da PI: 6.8931 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 36.7 | 9.4e-12 | 37 | 60 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWt++LH++Fv+ave+LGG + PGSC0003DMP400028813 37 PRLRWTHDLHRSFVHAVERLGGVD 60 8*********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-10 | 33 | 61 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MMKGLKFSEN SPSLSIELGN SNSDQSSIRP YVRSRMPRLR WTHDLHRSFV HAVERLGGVD 60 PEAASGRKRN RIDGSDQMNF PQGNFLHSYY HFNGKAVFDG HLNSNVTTNY LDKIASAPTV 120 FPPPWKPMPE KMMGLEGRCY MFRDFFNGSI TIRDGDDENK IVRAYGTSNL SNKSATSMIE 180 EEDSHSTMSL ELSLSSDISL DLTLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028813 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-68 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015164536.1 | 1e-144 | PREDICTED: transcription repressor KAN1-like | ||||
TrEMBL | M1BD39 | 1e-151 | M1BD39_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400042480 | 1e-152 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13843 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 4e-12 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028813 |
Publications ? help Back to Top | |||
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