PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028765
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 176aa    MW: 19514.4 Da    PI: 4.9809
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028765genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like37.17e-12225225
               G2-like  2 prlrWtpeLHerFveaveqLGGse 25
                          prlrWt++LH++Fv+ave+LGG++
  PGSC0003DMP400028765  2 PRLRWTHDLHRSFVHAVERLGGED 25
                          8*********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-9125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MPRLRWTHDL HRSFVHAVER LGGEDPVAEA ANGSKRNRMD GPDQVMYPHG SFLHHYYNDD  60
PNSTITSNYS DQIASTPPFF PPAPWKHMPE KMMGLERRSN SASNMFRDFF KGCTTVQDGS  120
VGDQYGSSLS NKHFSMIDTE EEAEDSGSTT MSLQPSAGLD DVNNNNNISL DLTLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028765
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755146e-71HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233787.11e-97myb family transcription factor EFM-like isoform X1
RefseqXP_010316579.11e-97myb family transcription factor EFM-like isoform X2
TrEMBLM1BCZ41e-129M1BCZ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000424021e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74502029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.19e-08G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]