PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 176aa MW: 19514.4 Da PI: 4.9809 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 37.1 | 7e-12 | 2 | 25 | 2 | 25 |
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWt++LH++Fv+ave+LGG++ PGSC0003DMP400028765 2 PRLRWTHDLHRSFVHAVERLGGED 25 8*********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-9 | 1 | 25 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MPRLRWTHDL HRSFVHAVER LGGEDPVAEA ANGSKRNRMD GPDQVMYPHG SFLHHYYNDD 60 PNSTITSNYS DQIASTPPFF PPAPWKHMPE KMMGLERRSN SASNMFRDFF KGCTTVQDGS 120 VGDQYGSSLS NKHFSMIDTE EEAEDSGSTT MSLQPSAGLD DVNNNNNISL DLTLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028765 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 6e-71 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233787.1 | 1e-97 | myb family transcription factor EFM-like isoform X1 | ||||
Refseq | XP_010316579.1 | 1e-97 | myb family transcription factor EFM-like isoform X2 | ||||
TrEMBL | M1BCZ4 | 1e-129 | M1BCZ4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400042402 | 1e-129 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42660.1 | 9e-08 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028765 |
Publications ? help Back to Top | |||
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