PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 473aa MW: 51937.8 Da PI: 4.6901 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 80.9 | 1.1e-25 | 152 | 215 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+g+++ln++a++L ++RRiYDi+NVLe+++liekk kn+i+wkg PGSC0003DMP400028726 152 RYDSSLGLLTKKFINLIKHAEDGMLDLNQAADTL-------EKRRIYDITNVLEGIGLIEKKLKNRIQWKG 215 6899******************************.......89**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.6E-27 | 150 | 217 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.54E-15 | 152 | 213 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.9E-31 | 152 | 215 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.7E-22 | 154 | 215 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 7.77E-48 | 226 | 332 | No hit | No description |
SuperFamily | SSF144074 | 1.6E-33 | 229 | 332 | No hit | No description |
Pfam | PF16421 | 1.9E-33 | 231 | 330 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MTGSSASTGA AAPPTAQSSS AAVNGGGRSQ ISHPIKRYLP FASMRPPFVT PEDYHRFSIP 60 GVDSRIGSAS LQPEAIVALK RKTGYIKEVE SSDWTANSGY ADVANSPLGT PVSGKGGRAH 120 GRSRATKNNK SGPQTPVYNA GSPSPLTPAS CRYDSSLGLL TKKFINLIKH AEDGMLDLNQ 180 AADTLEKRRI YDITNVLEGI GLIEKKLKNR IQWKGVDSSR PGEVDNDASI LKAETDRLSM 240 EERRLDERIR EMQEKLRDMS EDENNQRWLF VTEEDIKSLP CFQNETLIAV KAPHGTTLEV 300 PDPDEAVDYP QRRYRIILRS TMGPIDVYLV SQFEEKFEEM NGVEPPTTIP VASSSGSKDY 360 PTMEISTVSN SVTENEEQTH NVDHLSSDLG TSQDYNGGMM KILPSDVDND SDYWLLSDAN 420 VSITDMWKTD STVEWDGETL LRDFGIDDLG TPRAHTPSTI ADVPDPMNVP PR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 1e-24 | 145 | 216 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00661 | PBM | Transfer from Pp3c1_6880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028726 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239738 | 1e-114 | AC239738.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-240p19 map 1, complete sequence. | |||
GenBank | HG975440 | 1e-114 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 1e-114 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348487.1 | 0.0 | PREDICTED: transcription factor E2FA isoform X2 | ||||
Swissprot | Q9FNY0 | 1e-155 | E2FA_ARATH; Transcription factor E2FA | ||||
TrEMBL | M1BCW0 | 0.0 | M1BCW0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400042347 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-159 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028726 |
Publications ? help Back to Top | |||
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