PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028655
Common NameLOC102603511
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 708aa    MW: 79152 Da    PI: 6.1334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028655genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.2e-07126146425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           ++C ff++ G+C+ Gd+C F+H
  PGSC0003DMP400028655 126 VPCIFFQQ-GICRKGDKCGFMH 146
                           69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4933261IPR000571Zinc finger, CCCH-type
SMARTSM003560.00443360IPR000571Zinc finger, CCCH-type
PfamPF156633.0E-113487No hitNo description
PROSITE profilePS5010311.2356389IPR000571Zinc finger, CCCH-type
SMARTSM003560.126588IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173122149IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6123147IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5126147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4127147IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MAGPTPPPTE VPAPAPAPAT ATVQLSAEEE AIKSNTDCVY FLASPLTCKK GSECEYRHSD  60
MARLNPRDCW YWLNGNCLNP KCAFRHPPLD GFLEAQVPTA MGFSAAHMVS VAPMSQVPYA  120
SSKQAVPCIF FQQGICRKGD KCGFMHAPSF VSNNPTQPPV STASSETSTV KKAFGGVEKS  180
VQGTKLSQTN ALKPCELPKP VRKLGNHLTK KDNTFDEKVL PPNSVINREH SRYKPPSAPP  240
TNGIPFSAPN RKQQPIGIDD HNSMQYKDDE ISREPSPGFD VLVDDELRGS DYYHGEDHYG  300
GRRENGERNE YDMGDSADYD SVADIDRDMY RDVRGYDSYD RLQGHYAWEQ HIASSERIPG  360
GSAHLESRRY GTVDSPEHVE ISDLRHRLSK HRRGNGLKSV IGHDFSSEKH VEGRANKSSR  420
RDAHYLPSHD SSLNGGRLRG RIKLPVRSSS PDDRAELRLD RARDRGRLSS ERPQPYSYQG  480
RPRDRIKGRV QEDINSDGRN NRVPHIRRDI INVNNSDFLR PKSLAELKGR NTAESNEQQP  540
PRKRKFQKLD GGEDLSFEGP MPLKEILKRK RGGEGSMSSG GSEDDQHERK HQTERTSMTS  600
GNVDFPSSVT KNGSDLPIQK EESKLVPKSA DHQSPLYRSE NELEAEEEMV VEGADAQDHK  660
GYDQRDGHDD DYEAVEGEDY NFDEGDPDDE FLDDDDDDFA KKLGLVH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348543.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLM1BCR90.0M1BCR9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000422530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]