PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028654
Common NameLOC102603511
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 648aa    MW: 72893 Da    PI: 6.3542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028654genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.7e-076686425
                          ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                          ++C ff++ G+C+ Gd+C F+H
  PGSC0003DMP400028654 66 VPCIFFQQ-GICRKGDKCGFMH 86
                          69******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.235329IPR000571Zinc finger, CCCH-type
SMARTSM003560.12528IPR000571Zinc finger, CCCH-type
PfamPF146081.2E-4827No hitNo description
PROSITE profilePS5010314.1736289IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-56288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-66387IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-56687IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-46787IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MARLNPRDCW YWLNGNCLNP KCAFRHPPLD GFLEAQVPTA MGFSAAHMVS VAPMSQVPYA  60
SSKQAVPCIF FQQGICRKGD KCGFMHAPSF VSNNPTQPPV STASSETSTV KKAFGGVEKS  120
VQGTKLSQTN ALKPCELPKP VRKLGNHLTK KDNTFDEKVL PPNSVINREH SRYKPPSAPP  180
TNGIPFSAPN RKQQPIGIDD HNSMQYKDDE ISREPSPGFD VLVDDELRGS DYYHGEDHYG  240
GRRENGERNE YDMGDSADYD SVADIDRDMY RDVRGYDSYD RLQGHYAWEQ HIASSERIPG  300
GSAHLESRRY GTVDSPEHVE ISDLRHRLSK HRRGNGLKSV IGHDFSSEKH VEGRANKSSR  360
RDAHYLPSHD SSLNGGRLRG RIKLPVRSSS PDDRAELRLD RARDRGRLSS ERPQPYSYQG  420
RPRDRIKGRV QEDINSDGRN NRVPHIRRDI INVNNSDFLR PKSLAELKGR NTAESNEQQP  480
PRKRKFQKLD GGEDLSFEGP MPLKEILKRK RGGEGSMSSG GSEDDQHERK HQTERTSMTS  540
GNVDFPSSVT KNGSDLPIQK EESKLVPKSA DHQSPLYRSE NELEAEEEMV VEGADAQDHK  600
GYDQRDGHDD DYEAVEGEDY NFDEGDPDDE FLDDDDDDFA KKLGLVH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028654
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348543.10.0PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBLM1BCR90.0M1BCR9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000422530.0(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]