PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028585 | ||||||||
Common Name | LOC102605188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 247aa MW: 25842 Da PI: 9.246 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122 | 7e-38 | 31 | 116 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 ++kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s s s + PGSC0003DMP400028585 31 TVKKQPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--SVS 116 689******************************************************************88743333333333..222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.3E-35 | 37 | 124 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSTSVEPNGA VLLDSTAGSG GGVANSNGAL TVKKQPAKDR HSKVDGRGRR IRMPIVCAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSLRN SISSVSASAP 120 VDHKLPSPSL LHPLISPAPF LLGKRLRSED DDNGSGDKDV VPSAGFWAVP ARPDFGQVWS 180 FAAPPPEISH SAAMISHPSR LLQQQMEEAS VGRVGNYFPI AQGHLNLLAS LSGSGSGPQR 240 RDDDGQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028585 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239435 | 0.0 | AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence. | |||
GenBank | GQ496333 | 0.0 | GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348547.1 | 1e-178 | PREDICTED: transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-83 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | M1BCL7 | 1e-177 | M1BCL7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400042166 | 1e-166 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 8e-68 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028585 |
Entrez Gene | 102605188 |
Publications ? help Back to Top | |||
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