PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028584
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 449aa    MW: 49071.2 Da    PI: 9.194
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028584genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.22.4e-3731116288
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                           ++kk++ +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s ++s s  s +
  PGSC0003DMP400028584  31 TVKKQPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSLRNSIS--SVS 116
                           689******************************************************************88743333333333..222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3437123IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6753791IPR017887Transcription factor TCP subgroup
CDDcd132146.90E-30278377No hitNo description
SuperFamilySSF507291.23E-8288370IPR011993PH domain-like
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSTSVEPNGA VLLDSTAGSG GGVANSNGAL TVKKQPAKDR HSKVDGRGRR IRMPIVCAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTIPAS FSTVSVSLRN SISSVSASAP  120
VDHKLPSPSL LHPLISPAPF LLGKRLRSED DDNGSGDKDV VPSAGFWAVP ARPDFGQVWS  180
FAAPPPEISH SAAMISHPSR LLQQQMEEAS VGRVGNYFPI AQGHLNLLAS LSGSEEGLQT  240
YSPTMLLGLF KNVTECVLDP PKVVQFWTPH ARAFFYICPV ESLGEVQTKG TIYLSNIRMV  300
FVAKNPRDNF IAFDIPLLFV HGEKLNQPIF FCKNISGYVN PVIPANANED SIIPHSFKIM  360
FKECDCEAFI PLVFKLIGKV RRRYRRSRAK HRVDPLHEAT KTPVDEMTRY AYVDPNDSTS  420
IFLQLQPTPK SRLGCRMNQS QPTAETSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028584
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2394350.0AC239435.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-305j13 map 1, complete sequence.
GenBankGQ4963330.0GQ496333.1 Solanum lycopersicum TCP transcription factor 15 (TCP15) mRNA, complete cds.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348547.11e-167PREDICTED: transcription factor TCP7
TrEMBLM1BCL50.0M1BCL5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000421660.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-65TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]