PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028424
Common NameLOC102583973
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 345aa    MW: 39764.1 Da    PI: 4.8043
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028424genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34331252103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+ye+++d++ ++++sws+ +nsf+v+d++++a + Lp+yFkh+nf+SFvRQLn+YgF+kv+ e+         weF++  F +g+
  PGSC0003DMP400028424  33 FLTKTYELVDDPSSNDVVSWSRGNNSFIVWDPQNLAINFLPRYFKHNNFSSFVRQLNTYGFRKVNPEH---------WEFANGGFLRGE 112
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           k+ll++i+r+k++
  PGSC0003DMP400028424 113 KHLLRTIRRRKTS 125
                           **********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-3626116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.9E-3428122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5529122IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.2E-3033122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDDFDNLIKE EFDGSFLVPQ PKECLHENGP PPFLTKTYEL VDDPSSNDVV SWSRGNNSFI  60
VWDPQNLAIN FLPRYFKHNN FSSFVRQLNT YGFRKVNPEH WEFANGGFLR GEKHLLRTIR  120
RRKTSNFIKS SSSINQGMDS SSSSSSSSSS SSCVELGSFG SFDGEIDELR RDKQVLMIEL  180
VKLKQHQKAT KSRLQVMEQK LQGTEIKQEK IMSFLAKALQ NPNFVEQIMQ QKDKRKQLEE  240
AINNKRRRPI DYHEAAACPS KHHNFGNDDH DINNEFDDDL QVAMNMSHGN TLINLEEENN  300
YVEKNNEGFW EDMLDENNVE DEIMALLGVN EQEDEQVHVD VYSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-243112518123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233247KRKQLEEAINNKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028424
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350653.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-103HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM1BC860.0M1BC86_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000419440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-97heat shock transcription factor A6B
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]