PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | AP2 | ||||||||
Protein Properties | Length: 262aa MW: 28955.5 Da PI: 8.9205 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.2 | 3.2e-16 | 81 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PGSC0003DMP400028292 81 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 132 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.614 | 1 | 46 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-6 | 3 | 52 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-10 | 6 | 47 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-10 | 12 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.57E-11 | 14 | 48 | No hit | No description |
CDD | cd00018 | 6.05E-12 | 81 | 140 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-18 | 81 | 141 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-10 | 81 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-31 | 82 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.151 | 82 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-18 | 82 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-5 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.5E-5 | 122 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAGSRFLAII QSTVYLGGYD KEDKAARAYD LAALKYWGPT ATTNFPVTNY TKELEEMKHM 60 TKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA 120 EAYDIAAIKF RGVNAVTNFE MNRYDVEAIM QSSLPVGGTA KRLKLSLESE QKSSSSNNNH 180 QQQQQLTQCN STNNINFGAM PPVSAIPCGV PFDNTTPAFY HHNFFQYLHP GNASVPDASN 240 AAAMPLLPSA ADLFIWPHQS Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028292 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 1e-177 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006353275.2 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q6J9N8 | 1e-102 | AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7 | ||||
TrEMBL | M1BBX7 | 0.0 | M1BBX7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041758 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2580 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65510.1 | 1e-93 | AINTEGUMENTA-like 7 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028292 |
Publications ? help Back to Top | |||
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