PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028008 | ||||||||
Common Name | LOC102588222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 23114.7 Da PI: 8.2029 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.4 | 1.5e-17 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdps k r++lg+f+t +Aa+a++ a+ k++g PGSC0003DMP400028008 118 NYRGVRRRP-WGKFAAEIRDPSR--KGSRIWLGTFDTDMDAARAYDCAAFKMRG 168 59*******.**********854..34**********88*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.60E-32 | 117 | 176 | No hit | No description |
SMART | SM00380 | 2.8E-37 | 118 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-23 | 118 | 177 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-32 | 118 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-13 | 118 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.698 | 118 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-13 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-13 | 158 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MTKQDEGLTL ELIRQHLLED FTTTESFINS LNSCFSDQIS SSSDISPVFT SVKTEPSTSN 60 SLSDSPNSSY PNEPNSPISR YFNLHSDFPE FKIDSDTILS PVSDSSAGSN EDNNKKKNYR 120 GVRRRPWGKF AAEIRDPSRK GSRIWLGTFD TDMDAARAYD CAAFKMRGRK AILNFPLDAG 180 KSGAPANIGR KRRRENKMEL VEMINL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 115 | 177 | 2 | 64 | ATERF1 |
3gcc_A | 1e-28 | 115 | 177 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 189 | 193 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY192370 | 0.0 | AY192370.1 Lycopersicon esculentum ethylene response factor 4 (ERF4) mRNA, complete cds. | |||
GenBank | HG975517 | 0.0 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365343.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | M1BB76 | 1e-149 | M1BB76_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041328 | 1e-150 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 3e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028008 |
Entrez Gene | 102588222 |
Publications ? help Back to Top | |||
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