PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400028007
Common NameLOC102587899
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 297aa    MW: 33418.5 Da    PI: 8.9721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400028007genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19141191255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp+     +r++lg+fgta +Aa a+++a+ +l+g
  PGSC0003DMP400028007 141 RYRGVRQRP-WGKFAAEIRDPTRK--GTRVWLGTFGTAIDAALAYDRAAFRLRG 191
                           8********.**********8542..4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.56E-31140199No hitNo description
SMARTSM003805.6E-36141205IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-22141201IPR016177DNA-binding domain
PfamPF008471.8E-13141191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-31141200IPR001471AP2/ERF domain
PROSITE profilePS5103223.314141199IPR001471AP2/ERF domain
PRINTSPR003672.8E-13142153IPR001471AP2/ERF domain
PRINTSPR003672.8E-13181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDSSSLDMIR QHLLDDVVFM ENYCSSSSSS ETSSTLYSQT SLNSESLESL TSEIKLESNF  60
SFYPDFINTA QSLNLESASR LFDNSTIEFQ AKPQKKRSFN DRKPSLNISI PSVKKTEEPK  120
TGEVKTEYSV QKMVENSEKK RYRGVRQRPW GKFAAEIRDP TRKGTRVWLG TFGTAIDAAL  180
AYDRAAFRLR GSKAIMNFPL EVSNFKQENH EIEKNVVSLN LNTNSCGKRV RGEMENDDRV  240
VVKKEVKREQ MVATPLTPSN WSSIWDSGNG KGIFEVPPLS PLSPHPSFGY SQLLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-32140202163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Function -- GeneRIF ? help Back to Top
  1. StERF3 negatively regulates late blight resistance and abiotic tolerance in potato.
    [PMID: 25681825]
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400028007
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1258570.0JN125857.1 Solanum tuberosum ethylene response factor ERF3 (ERF3) mRNA, complete cds.
GenBankJX8274090.0JX827409.1 UNVERIFIED: Solanum tuberosum AP2 protein d3-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365342.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ404785e-92ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLM1BB750.0M1BB75_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000413270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-31ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tian Z, et al.
    The Potato ERF Transcription Factor StERF3 Negatively Regulates Resistance to Phytophthora infestans and Salt Tolerance in Potato.
    Plant Cell Physiol., 2015. 56(5): p. 992-1005
    [PMID:25681825]