PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400028007 | ||||||||
Common Name | LOC102587899 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 33418.5 Da PI: 8.9721 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 141 | 191 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+fgta +Aa a+++a+ +l+g PGSC0003DMP400028007 141 RYRGVRQRP-WGKFAAEIRDPTRK--GTRVWLGTFGTAIDAALAYDRAAFRLRG 191 8********.**********8542..4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.56E-31 | 140 | 199 | No hit | No description |
SMART | SM00380 | 5.6E-36 | 141 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-22 | 141 | 201 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-13 | 141 | 191 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-31 | 141 | 200 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 141 | 199 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-13 | 142 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-13 | 181 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MDSSSLDMIR QHLLDDVVFM ENYCSSSSSS ETSSTLYSQT SLNSESLESL TSEIKLESNF 60 SFYPDFINTA QSLNLESASR LFDNSTIEFQ AKPQKKRSFN DRKPSLNISI PSVKKTEEPK 120 TGEVKTEYSV QKMVENSEKK RYRGVRQRPW GKFAAEIRDP TRKGTRVWLG TFGTAIDAAL 180 AYDRAAFRLR GSKAIMNFPL EVSNFKQENH EIEKNVVSLN LNTNSCGKRV RGEMENDDRV 240 VVKKEVKREQ MVATPLTPSN WSSIWDSGNG KGIFEVPPLS PLSPHPSFGY SQLLVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-32 | 140 | 202 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400028007 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN125857 | 0.0 | JN125857.1 Solanum tuberosum ethylene response factor ERF3 (ERF3) mRNA, complete cds. | |||
GenBank | JX827409 | 0.0 | JX827409.1 UNVERIFIED: Solanum tuberosum AP2 protein d3-like mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365342.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 5-like | ||||
Swissprot | Q40478 | 5e-92 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | M1BB75 | 0.0 | M1BB75_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041327 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA963 | 23 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 4e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400028007 |
Entrez Gene | 102587899 |
Publications ? help Back to Top | |||
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