PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027896
Common NameLOC102604886
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 518aa    MW: 57437.2 Da    PI: 7.5302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027896genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543.1e-17335381455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  PGSC0003DMP400027896 335 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 381
                           6*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.476331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-18334385No hitNo description
SuperFamilySSF474593.4E-20334408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-20335389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-14335381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNPCLPEWNI ETELPVPHQK KPMGFDHELV ELLWRNGEVV LHNQTHKKQP GYDPNECRQF  60
NKYDQPTIRV AGNQTNLIQD DETVSWLNCP IYDSFDKEFC SPFLSDISTN PHLGEEPDKS  120
IRQSEDNNKV FKLDPLEINH VLPQSHHSGF NPNPMPPPRF HNFGSAQQKH HIVGGNQKGV  180
NFPPPIRSSN VQLGGKEARS NLMLQDIKEG SVMTVGSSHC GSNQVDTSRF SSSANRGLSA  240
AMITDYTGKI SPQSDTMDRD TFEPANTSSS SGRSGSSYAR ACNQSTATNS QGHKRKSRDG  300
EEPECQSKAD ELESAGGNKA AQKSGTARRS RAAEVHNLSE RRRRDRINEK MKALQELLPH  360
STKTDKASML DEAIEYLKSL QMQLQMMWMG SGMASMMFPG VQHYMSRMGM GMGPPSVPSM  420
HNAMHLARLP LVDPAIPLTQ AAPNNQAAAM CQNSMLNQVN YQRHLQNPNF PEQYASYMGF  480
HPLQGTSQPI NIFGLGSHTA QRSQQLPHPT NSNAPAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027896
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135820.0BT013582.1 Lycopersicon esculentum clone 132330F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357888.10.0PREDICTED: transcription factor PIF4
RefseqXP_015169146.10.0PREDICTED: transcription factor PIF4
RefseqXP_015169147.10.0PREDICTED: transcription factor PIF4
TrEMBLM1BAZ90.0M1BAZ9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000411560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-44phytochrome interacting factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]