PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027884
Common NameLOC102606235
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 893aa    MW: 98779 Da    PI: 6.4182
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027884genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24129230199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F 
  PGSC0003DMP400027884 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI 216
                           99*****************************97677775.9************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             ++++ +l+++++r+
  PGSC0003DMP400027884 217 --WNENNQLLLGIRRA 230
                           ..7888889****997 PP
2Auxin_resp120.99.7e-40255338183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           aahaa+t+s F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  PGSC0003DMP400027884 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                           79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-49114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-44122244IPR015300DNA-binding pseudobarrel domain
CDDcd100175.19E-23128229No hitNo description
SMARTSM010194.3E-25129231IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042129231IPR003340B3 DNA binding domain
PfamPF023621.1E-22129230IPR003340B3 DNA binding domain
PfamPF065071.2E-34255338IPR010525Auxin response factor
SuperFamilySSF542772.35E-6751830No hitNo description
PROSITE profilePS5174523.145756841IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MRVSSSGFNP QQEEAGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNK  60
EVDAHIPNYP GLPPQLICQL HNLTMHADVE TDEVYAQMTL QPLSPQEQKD VCLLPAELGI  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPCQELI AKDLHGNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DAVIFIWNEN NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYAKAVY HTRISVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FSLRLKRPWP SGLPSLPGFP NGDMTMNSPL SWLRGDMGDQ GMQSLNFQGF  420
GVTPFMQPRM DASMLGLQPD ILQTMAALDP SKLANQSLMQ FQHSIPNSSA PLSQSQMLQP  480
SHSQQNLIQG FSENHLISQA QMLQQQLQRR QNFNDQQQLL QPQLQRHQEV NSQFQHQQQT  540
KTISGLSQMA SATHPHLSHL QVLSSTGSPQ TFSDILGNHV NASSNSNMQS LLSSFSCDGA  600
STVLNVHETH PLVSSSSSSK RIALESQLPS RVTPFVVSQP EDVIAHNTKV SDLSSLLPPF  660
PSRESFSDYR GVEDSQSNAL YGFTDSLNIL QTGMSNMKGS SGDNGSLSIP YATSTFTSTV  720
GNEYPLNSDM TASSCVDESG FLQSSENGDQ ANPTNRIFVK VQKSGSFGRS LDISKFSSYH  780
ELRSELARMF GLEGLLEDPE RSGWQLVIVD RENDVLLLGD DPWQEFVNNV WYIKILSPHE  840
VQQMGKEGLD LPNGVQAQTQ TLPGNVNGCD DYMNQKGSRN TMNGIPLGSL DY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621235941388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027884
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5976280.0FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357893.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2YG670.0ARFQ_ORYSI; Auxin response factor 17
TrEMBLM1BAY70.0M1BAY7_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000411270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]