PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027846
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 119aa    MW: 12948.2 Da    PI: 4.481
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027846genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.3e-211270155
                   AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55
                          ++y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg+f ta+eAa a+++a+k ++g
  PGSC0003DMP400027846 12 CKYRGVRQRT-WGKWVAEIREpVYISGeyKNrgKRLWLGSFATADEAAIAYDEAAKVMYG 70
                          79*****999.**********666688896668***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-131270IPR001471AP2/ERF domain
CDDcd000181.73E-291279No hitNo description
Gene3DG3DSA:3.30.730.104.7E-291379IPR001471AP2/ERF domain
SMARTSM003801.1E-321384IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-201379IPR016177DNA-binding domain
PROSITE profilePS5103222.4451378IPR001471AP2/ERF domain
PRINTSPR003673.9E-101425IPR001471AP2/ERF domain
PRINTSPR003673.9E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MPGKGGPENS SCKYRGVRQR TWGKWVAEIR EPVYISGEYK NRGKRLWLGS FATADEAAIA  60
YDEAAKVMYG SNATLNFPNY CGSSSNDTSS LESSGQSSVD HEDLVVDDAE KIEIESDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-191478663ATERF1
3gcc_A5e-191478663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:12609047}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027846
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-126HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158993.15e-83PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotA2WL191e-32DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF71e-32DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLM1BAV45e-82M1BAV4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410679e-83(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.12e-25ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sun SJ, et al.
    Functional analysis of a novel Cys2/His2-type zinc finger protein involved in salt tolerance in rice.
    J. Exp. Bot., 2010. 61(10): p. 2807-18
    [PMID:20460361]
  3. Mallikarjuna G,Mallikarjuna K,Reddy MK,Kaul T
    Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.).
    Biotechnol. Lett., 2011. 33(8): p. 1689-97
    [PMID:21528404]
  4. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  5. Cui M, et al.
    Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice.
    Plant Physiol. Biochem., 2011. 49(12): p. 1384-91
    [PMID:22078375]
  6. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  7. Li X, et al.
    LcSAIN1, a novel salt-induced gene from sheepgrass, confers salt stress tolerance in transgenic Arabidopsis and rice.
    Plant Cell Physiol., 2013. 54(7): p. 1172-85
    [PMID:23695503]
  8. Schmidt R, et al.
    Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice.
    Plant Cell, 2013. 25(6): p. 2115-31
    [PMID:23800963]
  9. Huang YC,Huang WL,Hong CY,Lur HS,Chang MC
    Comprehensive analysis of differentially expressed rice actin depolymerizing factor gene family and heterologous overexpression of OsADF3 confers Arabidopsis Thaliana drought tolerance.
    Rice (N Y), 2012. 5(1): p. 33
    [PMID:24279948]
  10. Zhang XX, et al.
    OsDREB2A, a rice transcription factor, significantly affects salt tolerance in transgenic soybean.
    PLoS ONE, 2013. 8(12): p. e83011
    [PMID:24376625]
  11. Wang ST, et al.
    MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.).
    PLoS ONE, 2014. 9(3): p. e91357
    [PMID:24667308]
  12. Ma T, et al.
    LcWRKY5: an unknown function gene from sheepgrass improves drought tolerance in transgenic Arabidopsis.
    Plant Cell Rep., 2014. 33(9): p. 1507-18
    [PMID:24913125]
  13. Zhao J, et al.
    Global transcriptional profiling of a cold-tolerant rice variety under moderate cold stress reveals different cold stress response mechanisms.
    Physiol Plant, 2015. 154(3): p. 381-94
    [PMID:25263631]
  14. Chen M,Zhao Y,Zhuo C,Lu S,Guo Z
    Overexpression of a NF-YC transcription factor from bermudagrass confers tolerance to drought and salinity in transgenic rice.
    Plant Biotechnol. J., 2015. 13(4): p. 482-91
    [PMID:25283804]
  15. Gao Y, et al.
    A maize phytochrome-interacting factor 3 improves drought and salt stress tolerance in rice.
    Plant Mol. Biol., 2015. 87(4-5): p. 413-28
    [PMID:25636202]
  16. Cai W, et al.
    Overexpression of Rat Neurons Nitric Oxide Synthase in Rice Enhances Drought and Salt Tolerance.
    PLoS ONE, 2015. 10(6): p. e0131599
    [PMID:26121399]
  17. Sakuraba Y, et al.
    Rice ONAC106 Inhibits Leaf Senescence and Increases Salt Tolerance and Tiller Angle.
    Plant Cell Physiol., 2015. 56(12): p. 2325-39
    [PMID:26443376]
  18. Sato H, et al.
    The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice.
    Plant Biotechnol. J., 2016. 14(8): p. 1756-67
    [PMID:26841113]
  19. Yu Y, et al.
    Transgenic rice expressing a cassava (Manihot esculenta Crantz) plasma membrane gene MePMP3-2 exhibits enhanced tolerance to salt and drought stresses.
    Genet. Mol. Res., 2016.
    [PMID:26909954]