PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027845
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 439aa    MW: 49997.6 Da    PI: 4.1057
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027845genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.61.5e-086989122
                   AP2  1 sgykGVrwdkkrgrWvAeIrdp 22
                          ++y+GVr++  +g+WvAeIr+p
  PGSC0003DMP400027845 69 CKYRGVRQRT-WGKWVAEIREP 89
                          79*****999.**********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.86E-1369109No hitNo description
PROSITE profilePS5103210.77170101IPR001471AP2/ERF domain
SMARTSM003804.0E-970114IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-870108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-87090IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDFCVDRKLK RRRNGSDSID EILLRWRNFN KEVNSNNEQV KKKKKRKSPG NGSNKGCMPG  60
KGGPENSGCK YRGVRQRTWG KWVAEIREPV YISAAKVMYG SNAILNFPNC CDRSSNTRTS  120
SLESSVQSSI DHEDLGVDDA KNIEIESDLK TSDTPDDDDD DGNGVVSTDL CYDYANHGSP  180
ARCLTDEELE LIPEKNSLID LECNSRYFPK SQKSCVKVEI PVIEEEIDKD EFVHNDVSNT  240
IDVEPTVMCS KDDFSRPDEN CNSNDQIVLQ DMDYSMNILQ EQPLDFRSSE NLNEDVSTSL  300
EYMDHFLMND NCSMEATNIS DIFSLKENHD EGFDFQRFLE ESFDFKPMIV PQESSELNYA  360
KNEEQFDCTY AYNQQIELQN SETNSEIRSD GIQKEQNLGA FGLDDFGASN NWQPEDNIED  420
LSIFSFDFDV SSYINDIN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512DRKLKRRR
24046KKKKKRK
34146KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027845
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-103HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158990.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLM1BAV30.0M1BAV3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-19ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]