PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027844
Common NameLOC107058148
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 458aa    MW: 52290.3 Da    PI: 4.1931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027844genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1868126155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr++  +g+WvAeIr+ +++ g  k+  kr +lg++ ta +Aa a+++a+k ++g
  PGSC0003DMP400027844  68 CKYRGVRQRT-WGKWVAEIREpVYISGefKSkgKRLWLGTYSTAGDAAIAYDEAAKVMYG 126
                           79*****999.**********666688884446***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-1168126IPR001471AP2/ERF domain
CDDcd000184.98E-2968135No hitNo description
SuperFamilySSF541714.45E-1969134IPR016177DNA-binding domain
PROSITE profilePS5103222.28669134IPR001471AP2/ERF domain
SMARTSM003801.6E-3169140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-2869135IPR001471AP2/ERF domain
PRINTSPR003679.2E-97081IPR001471AP2/ERF domain
PRINTSPR003679.2E-9100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDFYVNRKLK RRRNGSDSID EILLRWRNFN PEVNSNNEQV KKKKRKSPGN GSNKGCMPGK  60
GGPENSGCKY RGVRQRTWGK WVAEIREPVY ISGEFKSKGK RLWLGTYSTA GDAAIAYDEA  120
AKVMYGSNAI LNFPNCCDSP ITRTSSLESS GQSSVDHEDL VIDNAKNIEI ESDLKTSDTP  180
EDDGGGVVNT DLSYDYANHG SPACSWTEEE LEVITEENSV IELTNLEYDS RFFPKSQKSC  240
VKVETPIMEE EIDKDEFVHN DVSNTIDMKP TVMFNKDDFS RPEEICNSND QIVLQDMDFR  300
SSENLNEDVS TRLEYMEHFL MEDNCSMEAT NISDIFSMTE NHDEAFDFQR FLEESFDFKP  360
MVVPQESAEL NYAKNQEQFE CKYAYNQQID LQNSETNSEI RLDRIISNQA DSKEQNLRAF  420
GLDDFGASNS WQPEDNIEDF SMLNFDFDIS SYINDIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1967134363ATERF1
3gcc_A5e-1967134363ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1512NRKLKRRR
24045KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027844
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159004.10.0PREDICTED: uncharacterized protein LOC107058148
TrEMBLM1BAV20.0M1BAV2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79651530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.19e-32ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]