PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400027835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 355aa MW: 39572 Da PI: 4.4928 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 110 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGVr++k +g+W+AeIrd + + +r++lg++ ta eA +a++ r+++e PGSC0003DMP400027835 110 SKYKGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAVEASRAYELKRLEFET 160 89*******9.**********55.....45***********************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.08E-17 | 110 | 159 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.75E-25 | 110 | 168 | No hit | No description |
Pfam | PF00847 | 3.0E-12 | 110 | 160 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-19 | 111 | 176 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.862 | 111 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-21 | 111 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MLKPLSSKFE NLGRNMKNKV DTNRLVRKIR IVCNDPDATD DSSDDERIDD SRCKRFVREI 60 KLQIGNSFNL TKASEIECSF QDSNNGEKKT KKEGLVKPLI QPRPAGGLLS KYKGVRQRKW 120 GKWAAEIRDP FKGRRVWLGT YNTAVEASRA YELKRLEFET RAKNSSTNVS RESSGSMVSE 180 YQNHGQNVAS GVSEDYAESS VSRTSHSLSS SSVLELDTLT SVSASAPILR LNGLNDNEKA 240 SNVAPLEAYV VEQEVPELPI LEETLPLSQI GESMDLDLEL ESFLIGADDF NQHLDEFVVN 300 DFEDPPVCLI EGDEQLPTGL PDFDDFNFDG YNESFSWMDD APRTNGTPLN IACP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-11 | 103 | 152 | 6 | 56 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400027835 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006367037.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF119-like | ||||
TrEMBL | M1BAU3 | 0.0 | M1BAU3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400041053 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2957 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25890.2 | 6e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400027835 |
Publications ? help Back to Top | |||
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