PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027835
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 355aa    MW: 39572 Da    PI: 4.4928
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027835genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18110160155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s+ykGVr++k +g+W+AeIrd +     + +r++lg++ ta eA +a++  r+++e 
  PGSC0003DMP400027835 110 SKYKGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAVEASRAYELKRLEFET 160
                           89*******9.**********55.....45***********************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-17110159IPR016177DNA-binding domain
CDDcd000188.75E-25110168No hitNo description
PfamPF008473.0E-12110160IPR001471AP2/ERF domain
SMARTSM003805.0E-19111176IPR001471AP2/ERF domain
PROSITE profilePS5103219.862111170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-21111160IPR001471AP2/ERF domain
PRINTSPR003675.0E-9112123IPR001471AP2/ERF domain
PRINTSPR003675.0E-9134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MLKPLSSKFE NLGRNMKNKV DTNRLVRKIR IVCNDPDATD DSSDDERIDD SRCKRFVREI  60
KLQIGNSFNL TKASEIECSF QDSNNGEKKT KKEGLVKPLI QPRPAGGLLS KYKGVRQRKW  120
GKWAAEIRDP FKGRRVWLGT YNTAVEASRA YELKRLEFET RAKNSSTNVS RESSGSMVSE  180
YQNHGQNVAS GVSEDYAESS VSRTSHSLSS SSVLELDTLT SVSASAPILR LNGLNDNEKA  240
SNVAPLEAYV VEQEVPELPI LEETLPLSQI GESMDLDLEL ESFLIGADDF NQHLDEFVVN  300
DFEDPPVCLI EGDEQLPTGL PDFDDFNFDG YNESFSWMDD APRTNGTPLN IACP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-11103152656Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027835
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367037.20.0PREDICTED: ethylene-responsive transcription factor ERF119-like
TrEMBLM1BAU30.0M1BAU3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000410530.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.26e-20ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]