PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400027753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 154aa MW: 17497 Da PI: 8.7006 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.1 | 1.2e-09 | 3 | 42 | 12 | 54 |
AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 g+++AeIrd + ng r++lg+f t e a a+++a++ ++ PGSC0003DMP400027753 3 MGKYAAEIRDSTRNG--IRVWLGTFNT-GEEALAYDQAALTMR 42 69********44465..**********.9999*******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.336 | 1 | 52 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-4 | 3 | 42 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-9 | 3 | 42 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-13 | 3 | 43 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.47E-12 | 4 | 42 | No hit | No description |
SMART | SM00380 | 7.7E-6 | 4 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MTMGKYAAEI RDSTRNGIRV WLGTFNTGEE ALAYDQAALT MRVRVLANLD GSVGRILKRT 60 ELDMEFIQCD INNLTWRGQI VETVVMNPSF GTQRKGHMFL PPNNAHVGGW IYRWKKYANH 120 DAEQTCYKLD NPHGFPQIAT MVSTRVNFLP LEF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400027753 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 7e-33 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. | |||
GenBank | HG975516 | 7e-33 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M1BAM7 | 1e-112 | M1BAM7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040921 | 1e-113 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-16 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400027753 |
Publications ? help Back to Top | |||
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