PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400027651 | ||||||||
Common Name | LOC102599422 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 408aa MW: 46054.3 Da PI: 7.6226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.8e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ + R++k+c++rw +yl PGSC0003DMP400027651 13 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAALQRCGKSCRLRWINYL 60 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.5 | 3.6e-14 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k+ w+ PGSC0003DMP400027651 66 RGTFSQQEENLIIQLHSLLGNK-WSQIASRLP-GRTDNEIKNLWN 108 899*******************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.498 | 8 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.39E-11 | 16 | 60 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.7E-13 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.345 | 65 | 115 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.6E-13 | 66 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.63E-9 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGRPCCYKQK LRKGLWSPEE DEKLINHITK YGHGCWSSVP KLAALQRCGK SCRLRWINYL 60 RPDLKRGTFS QQEENLIIQL HSLLGNKWSQ IASRLPGRTD NEIKNLWNSS IKKKLRQKGI 120 DPDTHNKLLS VVENEEKVSA ISMNIEKASE GSSELNFVES HENSNYGIQT DKPKSSLVTM 180 TMDGYPSNTT TSAAPLTHEF FLERFVTTHE TSTASCNKPL ELASYLSFRQ LNYGSNIGLS 240 MNSNTNNLLF NSKNSEMFTH QFNSTITNDN ILTSPIAAVA SNDSMRNGNS TSIELQRNSS 300 FFDSNAFSWG TADYDKSEKE ANIHPSVTDP EDIKWFEYLH TQLLPGNAIT NNQITQDLYS 360 EKSSIQFTTQ GSLSTWLQNH QQQPSLQTAN IYNKHSQRIP DAFGQFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-27 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400027651 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 0.0 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006339916.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | M1BAE0 | 0.0 | M1BAE0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040774 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-92 | myb domain protein 61 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400027651 |
Entrez Gene | 102599422 |
Publications ? help Back to Top | |||
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