PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027651
Common NameLOC102599422
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 408aa    MW: 46054.3 Da    PI: 7.6226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027651genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161360148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l++ ++++G g+W+++++   + R++k+c++rw +yl
  PGSC0003DMP400027651 13 KGLWSPEEDEKLINHITKYGHGCWSSVPKLAALQRCGKSCRLRWINYL 60
                          678*******************************************97 PP

2Myb_DNA-binding44.53.6e-1466108145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           rg ++++E+ l+++++ +lG++ W+ Ia++++ gRt++++k+ w+
  PGSC0003DMP400027651  66 RGTFSQQEENLIIQLHSLLGNK-WSQIASRLP-GRTDNEIKNLWN 108
                           899*******************.*********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-27463IPR009057Homeodomain-like
PROSITE profilePS5129424.498864IPR017930Myb domain
SuperFamilySSF466893.74E-2911107IPR009057Homeodomain-like
SMARTSM007171.3E-121262IPR001005SANT/Myb domain
PfamPF002493.9E-141360IPR001005SANT/Myb domain
CDDcd001673.39E-111660No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2464115IPR009057Homeodomain-like
SMARTSM007176.7E-1365113IPR001005SANT/Myb domain
PROSITE profilePS5129419.34565115IPR017930Myb domain
PfamPF002492.6E-1366108IPR001005SANT/Myb domain
CDDcd001675.63E-968108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGRPCCYKQK LRKGLWSPEE DEKLINHITK YGHGCWSSVP KLAALQRCGK SCRLRWINYL  60
RPDLKRGTFS QQEENLIIQL HSLLGNKWSQ IASRLPGRTD NEIKNLWNSS IKKKLRQKGI  120
DPDTHNKLLS VVENEEKVSA ISMNIEKASE GSSELNFVES HENSNYGIQT DKPKSSLVTM  180
TMDGYPSNTT TSAAPLTHEF FLERFVTTHE TSTASCNKPL ELASYLSFRQ LNYGSNIGLS  240
MNSNTNNLLF NSKNSEMFTH QFNSTITNDN ILTSPIAAVA SNDSMRNGNS TSIELQRNSS  300
FFDSNAFSWG TADYDKSEKE ANIHPSVTDP EDIKWFEYLH TQLLPGNAIT NNQITQDLYS  360
EKSSIQFTTQ GSLSTWLQNH QQQPSLQTAN IYNKHSQRIP DAFGQFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339916.10.0PREDICTED: myb-related protein 330-like
TrEMBLM1BAE00.0M1BAE0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000407740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-92myb domain protein 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]