PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400027441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25610.2 Da PI: 7.7893 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.6 | 3e-15 | 52 | 98 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRRdriN +++Lr+l+P++ +K++Ka L+ +ve++k+L PGSC0003DMP400027441 52 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAGLLRSVVEHVKDL 98 78*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.59 | 49 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 52 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-13 | 52 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.31E-12 | 52 | 100 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-15 | 52 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-13 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.56E-4 | 136 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDDSSCSEYL PETHEILSSW CHNLQEVNCQ LPLIPTNSCY FPTWSQEFSA SRSHSEAEKR 60 RRDRINAQLS TLRKLIPTSE KMDKAGLLRS VVEHVKDLKE RAKEMSTVLN TPSDIDEVII 120 EEEDESSNNN NILVKVSFSC DDRPELFSEL NRGLKNLKLT TIEANITSLG GRIKCIFSLQ 180 SINVVCTTHS LKHSLRVLLA RIATSPSTPN FRIKSKRQRF FLLAT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 213 | 218 | KSKRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400027441 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338818.1 | 1e-165 | PREDICTED: transcription factor bHLH51-like | ||||
TrEMBL | M1B9X7 | 1e-163 | M1B9X7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040448 | 1e-164 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5820 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 7e-37 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400027441 |
Publications ? help Back to Top | |||
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