PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027271
Common NameLOC102583697
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 172aa    MW: 19630.8 Da    PI: 10.2873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027271genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000384668123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C+k+F++   L  H  +H
  PGSC0003DMP400027271 46 FECKTCNKRFPSFQALGGHRASH 68
                          89**********99999998887 PP
2zf-C2H215.16.7e-0589111123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++Cg+ Fs    L  H+r+H
  PGSC0003DMP400027271  89 HKCSICGMEFSLGQALGGHMRRH 111
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7854673IPR007087Zinc finger, C2H2
SuperFamilySSF576674.52E-946111No hitNo description
PfamPF139121.5E-124670IPR007087Zinc finger, C2H2
SMARTSM003550.0754668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-486112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.13889116IPR007087Zinc finger, C2H2
PfamPF139122.4E-989114IPR007087Zinc finger, C2H2
SMARTSM003550.03489111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTSMKRSRED NMQIEVEAMA NCALMALLSR FNNTSSLSAH IHINDFECKT CNKRFPSFQA  60
LGGHRASHNK RSRLFGEFLV QTNKKNKMHK CSICGMEFSL GQALGGHMRR HRDEINKTTA  120
HEQTMIPILK KSNSIKRIFC LDLNLTPRDD NVDFKLWPTT PIASPVLRCF F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755231e-101HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363361.11e-126PREDICTED: zinc finger protein ZAT11-like
TrEMBLM1B9I91e-125M1B9I9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000402061e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.14e-36C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]