PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400027224
Common NameLOC102586025
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 219aa    MW: 25981.4 Da    PI: 9.4871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400027224genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-15956148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEd +l+ +vk++G ++W+  a+  g++Rt+k+c++rw +yl
  PGSC0003DMP400027224  9 RGPWTEEEDVQLLFYVKLFGDRRWDFLAKVSGLKRTGKSCRLRWVNYL 56
                          89********************************************97 PP

2Myb_DNA-binding53.36.6e-1763107248
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           g++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
  PGSC0003DMP400027224  63 GKMTPQEERLVLELHSKWGNR-WSRIARKIP-GRTDNEIKNYWRTHM 107
                           899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.534456IPR017930Myb domain
SMARTSM007173.2E-13858IPR001005SANT/Myb domain
SuperFamilySSF466899.16E-298103IPR009057Homeodomain-like
PfamPF002493.1E-14956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-211063IPR009057Homeodomain-like
CDDcd001672.46E-81156No hitNo description
PROSITE profilePS5129426.92557111IPR017930Myb domain
SMARTSM007174.1E-1661109IPR001005SANT/Myb domain
PfamPF002492.1E-1563106IPR001005SANT/Myb domain
CDDcd001676.30E-1064107No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2364110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVQEEIMRRG PWTEEEDVQL LFYVKLFGDR RWDFLAKVSG LKRTGKSCRL RWVNYLNPDL  60
KHGKMTPQEE RLVLELHSKW GNRWSRIARK IPGRTDNEIK NYWRTHMRKK AQEQRKKSSI  120
SPSSSSSSSS ITHEENERNF YDTGGIKLLQ VEGEKKSSDQ EQHGKSMKVY SMDEIWKDIE  180
LLEENEEKMN KPIMGSISPL WDYSLDSLWK DFDWSSFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2891114105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-28711125128MYB TRANSFORMING PROTEIN
1mse_C1e-2861111105C-Myb DNA-Binding Domain
1msf_C1e-2861111105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400027224
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0131100.0BT013110.1 Lycopersicon esculentum clone 114397F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363368.11e-160PREDICTED: transcription factor MYB48
SwissprotQ9LX825e-75MYB48_ARATH; Transcription factor MYB48
TrEMBLM1B9E21e-158M1B9E2_SOLTU; Transcription factor MYB48
STRINGPGSC0003DMT4000401491e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-73myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]