PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026903
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 352aa    MW: 39801.5 Da    PI: 8.6925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026903genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-52141391128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrF Ptdeel+v+yL+kkv+g++++l ++i e+d+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+d
  PGSC0003DMP400026903  14 LPPGFRFYPTDEELLVQYLCKKVAGHDFPL-QIIGEIDLYKFDPWVLPSKATFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTD 101
                           79****************************.89***************988899*********************************** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
  PGSC0003DMP400026903 102 KIITS-QGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRL 139
                           *9999.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6510163IPR003441NAC domain
PROSITE profilePS5100560.39514163IPR003441NAC domain
PfamPF023653.9E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGVQEKDPLL QLSLPPGFRF YPTDEELLVQ YLCKKVAGHD FPLQIIGEID LYKFDPWVLP  60
SKATFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITSQGRK VGIKKALVFY  120
VGKAPKGSKT NWIMHEYRLF ESSRKNNGSS KLDEWVLCRI YKKNSSGPKP LMSGLHSSNE  180
YSHGSSTSSS SQFDDMLESL PEMDDRFSNL PRLNSLKTEK LNLERLDSAN FDWAILAGLK  240
PMPELHPANQ ASGVQGQAQG NVNNHIHNHN NNNMNFLNDV YAHPTTNFRG NTKVESINLD  300
EEVESGNRNQ RIDQSSYFQQ SLNGFSQAYT NSVDQFGIQC PNQTLNLGFR Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-10511694171NO APICAL MERISTEM PROTEIN
1ut4_B1e-10511694171NO APICAL MERISTEM PROTEIN
1ut7_A1e-10511694171NO APICAL MERISTEM PROTEIN
1ut7_B1e-10511694171NO APICAL MERISTEM PROTEIN
3swm_A1e-10511697174NAC domain-containing protein 19
3swm_B1e-10511697174NAC domain-containing protein 19
3swm_C1e-10511697174NAC domain-containing protein 19
3swm_D1e-10511697174NAC domain-containing protein 19
3swp_A1e-10511697174NAC domain-containing protein 19
3swp_B1e-10511697174NAC domain-containing protein 19
3swp_C1e-10511697174NAC domain-containing protein 19
3swp_D1e-10511697174NAC domain-containing protein 19
4dul_A1e-10511694171NAC domain-containing protein 19
4dul_B1e-10511694171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026903
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7041770.0AY704177.1 Solanum tuberosum jasmonic acid 2 mRNA, complete cds.
GenBankHM7496510.0HM749651.1 Solanum tuberosum cultivar Superior RSI5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233972.10.0jasmonic acid 2
SwissprotQ9SQL00.0JA2_SOLLC; NAC domain-containing protein JA2
TrEMBLM1B8M10.0M1B8M1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000396700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31222452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-124NAC family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]