PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400026844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 73aa MW: 8303.54 Da PI: 10.4237 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.1 | 1e-13 | 8 | 53 | 6 | 55 |
AP2 6 VrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 V++++ +g+WvAeIr p++ r+r lg+fg+ eeAa a++ + +l+g PGSC0003DMP400026844 8 VSQRH-WGKWVAEIRLPRK---RTRLLLGTFGSTEEAAFAYDVEASRLRG 53 89999.**********954...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.978 | 4 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-25 | 4 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-9 | 5 | 16 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-24 | 8 | 67 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.47E-24 | 8 | 63 | No hit | No description |
SuperFamily | SSF54171 | 3.73E-18 | 8 | 62 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.4E-8 | 8 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-9 | 43 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MMNVYGTVSQ RHWGKWVAEI RLPRKRTRLL LGTFGSTEEA AFAYDVEASR LRGTDARLNF 60 PHLVLAFDMF NS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400026844 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 2e-71 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359000.1 | 5e-40 | PREDICTED: uncharacterized protein LOC102597259 | ||||
Swissprot | Q8H1E4 | 1e-23 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | M1B8H9 | 2e-46 | M1B8H9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039593 | 3e-47 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 5e-26 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400026844 |
Publications ? help Back to Top | |||
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