PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400026671 | ||||||||
Common Name | LOC102588157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 201aa MW: 23318.9 Da PI: 10.5777 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.1 | 5.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng+lKKA+ELS+LCdaeva+++fs++gk y ++s PGSC0003DMP400026671 9 KRIENQTNRQVTFSKRRNGLLKKAYELSILCDAEVALLLFSPSGKAYNFAS 59 79**********************************************986 PP | |||||||
2 | K-box | 67.1 | 6.1e-23 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + +e ++++++ + + i++L+ +hl Ge+L+sL +keL+qLe+qL ++++iRskK +++ e+i+ l+++ k l+een L+k+ PGSC0003DMP400026671 81 QGLRAMEVWRTKIDDMTRTIHELEARDKHLAGEELSSLGMKELKQLERQLRIGVERIRSKKRRIISEHIHGLKRRHKILHEENIHLQKQ 169 55667899*****************9*************************************************************99 PP K-box 98 l 98 + PGSC0003DMP400026671 170 V 170 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.646 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.81E-38 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-31 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.0E-21 | 85 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.709 | 86 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGRGKVELKR IENQTNRQVT FSKRRNGLLK KAYELSILCD AEVALLLFSP SGKAYNFASH 60 DIERTILRYK NEVGLSKNSD QGLRAMEVWR TKIDDMTRTI HELEARDKHL AGEELSSLGM 120 KELKQLERQL RIGVERIRSK KRRIISEHIH GLKRRHKILH EENIHLQKQV RLSEIEGSSR 180 ILDSEASELL SKGRRIIYDL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6byy_A | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 4e-23 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-23 | 1 | 69 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400026671 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF270624 | 0.0 | KF270624.1 Solanum lycopersicum cultivar Florida Petite TM8-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166003.1 | 1e-141 | PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
TrEMBL | M1B837 | 1e-140 | M1B837_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039313 | 1e-140 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 7e-43 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400026671 |
Entrez Gene | 102588157 |
Publications ? help Back to Top | |||
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