PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400026631 | ||||||||
Common Name | LOC102581099 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YC | ||||||||
Protein Properties | Length: 213aa MW: 22684.2 Da PI: 4.9806 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 143.8 | 4.1e-45 | 1 | 103 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ++ fw+ q ie+ dfk+h++P++rik+i+k++++v ++sae+P+l+skacelf+leltlrsw ha+en+r tlkk+d aaa+ rt+ PGSC0003DMP400026631 1 MRIFWNCQreeIEELDDFKHHQFPISRIKRIIKSENNVLKVSAETPILFSKACELFVLELTLRSWFHAQENNRGTLKKTDFAAAIRRTE 89 689**99877789999************************************************************************* PP NF-YC 88 ifdflvdivprdel 101 ifdfl d+vp de+ PGSC0003DMP400026631 90 IFDFLADVVPADEI 103 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.37E-25 | 9 | 110 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.3E-14 | 22 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-28 | 23 | 99 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MRIFWNCQRE EIEELDDFKH HQFPISRIKR IIKSENNVLK VSAETPILFS KACELFVLEL 60 TLRSWFHAQE NNRGTLKKTD FAAAIRRTEI FDFLADVVPA DEINEVATGF GPGMVGPTAG 120 GGFPYFYPPM GQLAMPGVML GGPAMPGVMP GGLAMPGPML GGPAMPEVMI GGPAMPVVAP 180 SVYVQPPLQA WQPAGDNSNA GGGNGGQGNF GP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-36 | 8 | 99 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400026631 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351461.1 | 1e-154 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 3e-62 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | M1B803 | 1e-153 | M1B803_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400039254 | 1e-153 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 4e-49 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400026631 |
Entrez Gene | 102581099 |
Publications ? help Back to Top | |||
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