PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026612
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 388aa    MW: 43500.2 Da    PI: 4.5215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026612genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.3e-12186207526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C+++++tG Ck+G++CkF+H+
  PGSC0003DMP400026612 186 DCPYYMKTGMCKFGSNCKFNHP 207
                           7********************8 PP
2zf-CCCH31.72.5e-10231255327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           + +C++++ +G CkyG  CkF+H++
  PGSC0003DMP400026612 231 QIECKYYLTSGGCKYGKACKFNHSR 255
                           568********************95 PP
3zf-CCCH41.62e-13277300326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           +++C++++rtG CkyG++C+F+H+
  PGSC0003DMP400026612 277 EKECPYYMRTGSCKYGSNCRFHHP 300
                           689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.94E-7181208IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6181208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723181209IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9186207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5187206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474228256IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4228255IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-8232255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6233257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-6234256IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6274301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995274302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7275301IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-11277300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6280299IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEAIEQHQNQ NQNQNQNHNQ SSDQTEELGI ESQNSETLLL PSDLNFQNPN QNQPKADESD  60
DDDEMAMQAI CEELKNLVLS QVLDEDGGNQ DLHHLDREES GELKEKLEDE LENVEGNDDG  120
WGYVGEYGYD QYDEDGDENR SGSRNGNEID GENENGYEGD SKEAGFNANR INKRKINYPL  180
RPDAQDCPYY MKTGMCKFGS NCKFNHPSRR RIQGTKDKGK QREDSQERPG QIECKYYLTS  240
GGCKYGKACK FNHSREKGAI SPIVEFNFLG LPIRLGEKEC PYYMRTGSCK YGSNCRFHHP  300
DPTTVAGADL SSGHNNTGAV PVQAASHSSA SSWSPPRSLN DTAPYVPMMY PPTQGTASPN  360
TEWNGYQVVH NFAYYLLHVV YDVCSVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026612
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351454.10.0PREDICTED: zinc finger CCCH domain-containing protein 67 isoform X2
TrEMBLM1B7Y60.0M1B7Y6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392290.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-66C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]