PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400026070 | ||||||||
Common Name | LOC102579124 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HSF | ||||||||
Protein Properties | Length: 499aa MW: 55721.3 Da PI: 4.7775 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.5 | 2.9e-35 | 31 | 122 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d+++++++sws + +sfv++d+ e+ak++LpkyFkhsnf+SFvRQLn+YgF+kv +++ w+F+++ F +g+ PGSC0003DMP400026070 31 FLMKTYDMVDDPSTDKIVSWSPTDSSFVIWDPPELAKELLPKYFKHSNFSSFVRQLNTYGFRKVGSDN---------WKFSNDGFIRGQ 110 9********************999*****************************************999.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 k+ll++i r+k PGSC0003DMP400026070 111 KHLLKNISRRKP 122 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.8E-59 | 27 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.59E-35 | 27 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.4E-38 | 28 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 9.9E-32 | 31 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-20 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-20 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 70 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 5.1E-20 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MGSTSMDAGG SSPVPEPTPA PMASTNTLPP FLMKTYDMVD DPSTDKIVSW SPTDSSFVIW 60 DPPELAKELL PKYFKHSNFS SFVRQLNTYG FRKVGSDNWK FSNDGFIRGQ KHLLKNISRR 120 KPAHGQSQQQ QQQQQLHGQS ASVGACVEVG NFGIEKEVEW LKRDKNVLMQ ELVKLRQHQQ 180 TTDNQMQTMV QNLQIMEQRQ QQMMSFLAKA VNSPGFLAQF VQQQNDNNKR KMEGNKKRRI 240 RQDIPSDDHS VSPADGQLVK YQPIMNEAVK GMLRQIPELD SSPRLENFSN SPESSPTGDA 300 FDGRSNNRIS GVTLQEVSHA FSQPFASATS AIAGQSSLSA NIQFSESSSL VGAQDLPPIL 360 PFSSDMIMPV PSQLQEIVPE NNMDINGTER GHDSFMDPTL WGNGKLPLEN DIFPPDLQIK 420 WESALIDDIG EPPSVGDPSW EKFLQSLYPT ESEEMGSVEI ENINTTETES LENGWYNVQH 480 MEHLTEQMGL LTSNTKKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-28 | 1 | 120 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-28 | 1 | 120 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-28 | 1 | 120 | 3 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400026070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 0.0 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006352886.1 | 0.0 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_006352887.1 | 0.0 | PREDICTED: heat shock factor protein HSF8 | ||||
Refseq | XP_006352888.1 | 0.0 | PREDICTED: heat shock factor protein HSF8 | ||||
Swissprot | Q40152 | 0.0 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | M1B6S4 | 0.0 | M1B6S4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400038381 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-122 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400026070 |
Entrez Gene | 102579124 |
Publications ? help Back to Top | |||
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