PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026069
Common NameLOC102579124
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 499aa    MW: 55721.3 Da    PI: 4.7775
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026069genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35311222102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl+k+y++++d+++++++sws + +sfv++d+ e+ak++LpkyFkhsnf+SFvRQLn+YgF+kv +++         w+F+++ F +g+
  PGSC0003DMP400026069  31 FLMKTYDMVDDPSTDKIVSWSPTDSSFVIWDPPELAKELLPKYFKHSNFSSFVRQLNTYGFRKVGSDN---------WKFSNDGFIRGQ 110
                           9********************999*****************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll++i r+k 
  PGSC0003DMP400026069 111 KHLLKNISRRKP 122
                           *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-5927120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.59E-3527120IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3828120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.9E-3231120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-203154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGSTSMDAGG SSPVPEPTPA PMASTNTLPP FLMKTYDMVD DPSTDKIVSW SPTDSSFVIW  60
DPPELAKELL PKYFKHSNFS SFVRQLNTYG FRKVGSDNWK FSNDGFIRGQ KHLLKNISRR  120
KPAHGQSQQQ QQQQQLHGQS ASVGACVEVG NFGIEKEVEW LKRDKNVLMQ ELVKLRQHQQ  180
TTDNQMQTMV QNLQIMEQRQ QQMMSFLAKA VNSPGFLAQF VQQQNDNNKR KMEGNKKRRI  240
RQDIPSDDHS VSPADGQLVK YQPIMNEAVK GMLRQIPELD SSPRLENFSN SPESSPTGDA  300
FDGRSNNRIS GVTLQEVSHA FSQPFASATS AIAGQSSLSA NIQFSESSSL VGAQDLPPIL  360
PFSSDMIMPV PSQLQEIVPE NNMDINGTER GHDSFMDPTL WGNGKLPLEN DIFPPDLQIK  420
WESALIDDIG EPPSVGDPSW EKFLQSLYPT ESEEMGSVEI ENINTTETES LENGWYNVQH  480
MEHLTEQMGL LTSNTKKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2811203129Heat shock factor protein 1
5d5v_B7e-2811203129Heat shock factor protein 1
5d5v_D7e-2811203129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026069
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352886.10.0PREDICTED: heat shock factor protein HSF8
RefseqXP_006352887.10.0PREDICTED: heat shock factor protein HSF8
RefseqXP_006352888.10.0PREDICTED: heat shock factor protein HSF8
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLM1B6S40.0M1B6S4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000383810.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-122heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  4. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]