PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400026055
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 218aa    MW: 24528.9 Da    PI: 10.622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400026055genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.3e-29164213251
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                           pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  PGSC0003DMP400026055 164 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 213
                           9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-26161213IPR009057Homeodomain-like
SuperFamilySSF466894.48E-14161216IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-22164217IPR006447Myb domain, plants
PfamPF002494.7E-6165213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MELFPAQPDL SLKISPPNIK PSSSTWKRKI TSEDDVHMDL GFWKRAHVVE STNSSNTSSC  60
FDLSLSNNPT KPNYLHNLKN YNTSQQNQMI IRGIPVYHQK PFASTTTTTT TFPIPSSPCS  120
IISNNNINNT ISSCASTRPN FQQGGFFRSR FLSRYPVKRS TRAPRMRWTS TLHARFVHAV  180
ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQVIFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-15165213452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400026055
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092920.0AP009292.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0320P23, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352907.11e-159PREDICTED: probable transcription factor KAN2
TrEMBLM1B6Q91e-160M1B6Q9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000383661e-158(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.18e-37G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]