PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 514aa MW: 56165.9 Da PI: 4.9115 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.6 | 1.6e-16 | 313 | 359 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq PGSC0003DMP400025912 313 VHNLSERKRRDRINEKMKALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 359 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-20 | 307 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.114 | 309 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.97E-17 | 312 | 363 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-20 | 313 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-14 | 313 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-18 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MNYCVVPDFK MDDDYSDIAS AIFNISKKST IADEEIMELV WQNGRVIMQS QNQRSVRKSN 60 LFSEQSAVEE TVAASAPLYM QEDEMNSWLQ SPLDDSSFDD FLNTTPSCAA VTSAAAPPGE 120 IGTSTVEIRP PLAPPSSRPV RCTEGELPHR LQNFGHFSRL PEGAILRNGN TSSSRHSVRA 180 STIVDSNETP VVAGPEYMIS RVSDDVPLAS AVNVRGVEMT AMATTSGDRE VTTACELTLT 240 ASTSGSGGSV STRSDLPQPS YKEADAAAED RKRKGRESDD NDGQSEDVEY EFADARKQVR 300 SSTSAKKSRA AEVHNLSERK RRDRINEKMK ALQELIPHCN KSDKASMLDE AIEYLKSLQL 360 QVQMMATGCS LVPVMYPGIP QYMTTMGMNM GMGMSMEMGR NLPMVSYPPL MPDPAMRNAA 420 AAAQMTPQYP LPAYHMPPFP APDPSRIPVG NQADPPRLYS HVGHNINQPR LANFSDPYHQ 480 YFGLQQAQPM LLQGVEQPSS SKPEESAGNH QSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 317 | 322 | ERKRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025912 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364548.1 | 0.0 | PREDICTED: transcription factor PIF1-like | ||||
TrEMBL | M1B6D7 | 0.0 | M1B6D7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400038134 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 1e-55 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025912 |
Publications ? help Back to Top | |||
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