PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400025911
Common NameLOC102583507
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 516aa    MW: 56408.1 Da    PI: 4.9115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400025911genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.6e-16313359455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  Er+RRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  PGSC0003DMP400025911 313 VHNLSERKRRDRINEKMKALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 359
                           6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-20307374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.114309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.71E-17312363No hitNo description
Gene3DG3DSA:4.10.280.103.0E-20313366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-14313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-18315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNYCVVPDFK MDDDYSDIAS AIFNISKKST IADEEIMELV WQNGRVIMQS QNQRSVRKSN  60
LFSEQSAVEE TVAASAPLYM QEDEMNSWLQ SPLDDSSFDD FLNTTPSCAA VTSAAAPPGE  120
IGTSTVEIRP PLAPPSSRPV RCTEGELPHR LQNFGHFSRL PEGAILRNGN TSSSRHSVRA  180
STIVDSNETP VVAGPEYMIS RVSDDVPLAS AVNVRGVEMT AMATTSGDRE VTTACELTLT  240
ASTSGSGGSV STRSDLPQPS YKEADAAAED RKRKGRESDD NDGQSEDVEY EFADARKQVR  300
SSTSAKKSRA AEVHNLSERK RRDRINEKMK ALQELIPHCN KSDKASMLDE AIEYLKSLQL  360
QVQMMATGCS LVPVMYPGIP QYMTTMGMNM GMGMSMEMGR NLPMVSYPPL MPDPAMRNAA  420
AAAQMTPQYP LPAYHMPPFP APDPSRIPVG NQADPPRLYS HVGHNINQPR LANFSDPYHQ  480
YFGLQQAQPM LLQNQGVEQP SSSKPEESAG NHQSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400025911
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364548.10.0PREDICTED: transcription factor PIF1-like
TrEMBLM1B6D60.0M1B6D6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000381340.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.39e-58phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]