PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400025910 | ||||||||
Common Name | LOC102583507 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 52336.6 Da PI: 5.3328 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.8 | 1.5e-16 | 277 | 323 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq PGSC0003DMP400025910 277 VHNLSERKRRDRINEKMKALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 323 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.36E-20 | 271 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.114 | 273 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.72E-17 | 276 | 327 | No hit | No description |
Pfam | PF00010 | 5.2E-14 | 277 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-20 | 277 | 330 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-18 | 279 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MELVWQNGRV IMQSQNQRSV RKSNLFSEQS AVEETVAASA PLYMQEDEMN SWLQSPLDDS 60 SFDDFLNTTP SCAAVTSAAA PPGEIGTSTV EIRPPLAPPS SRPVRCTEGE LPHRLQNFGH 120 FSRLPEGAIL RNGNTSSSRH SVRASTIVDS NETPVVAGPE YMISRVSDDV PLASAVNVRG 180 VEMTAMATTS GDREVTTACE LTLTASTSGS GGSVSTRSDL PQPSYKEADA AAEDRKRKGR 240 ESDDNDGQSE DVEYEFADAR KQVRSSTSAK KSRAAEVHNL SERKRRDRIN EKMKALQELI 300 PHCNKSDKAS MLDEAIEYLK SLQLQVQMMA TGCSLVPVMY PGIPQYMTTM GMNMGMGMSM 360 EMGRNLPMVS YPPLMPDPAM RNAAAAAQMT PQYPLPAYHM PPFPAPDPSR IPVGNQADPP 420 RLYSHVGHNI NQPRLANFSD PYHQYFGLQQ AQPMLLQNQG VEQPSSSKPE ESAGNHQSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 286 | ERKRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400025910 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364548.1 | 0.0 | PREDICTED: transcription factor PIF1-like | ||||
TrEMBL | M1B6D6 | 0.0 | M1B6D6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400038134 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 4e-51 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400025910 |
Entrez Gene | 102583507 |
Publications ? help Back to Top | |||
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